rs31670044 SNP Detail

Summary

• ID
  rs31670044
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81908212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTTTTT TTTCTGTTTT
  GTTTTGCTTT TTTTTCCATT TTTGTTTTCA AGATAGGGTT TCTCTCTGTA GTCTTTGCTG
  TCCTGGAGTT TGACCTGTAG GCTCACTGGC CACAAATTCA CAGAGATCCA TTTCCTCAGC
  CTCTGAGTGC TGGGATTGAA GGTCTGTGCC ATCACTGTCC AGCCCTTCTT ATTCTTTTTA
  R
  TTGCTCCTAA CTTACTTTCT TTATAGCTCA AGCATTGCTT TTGCCACCAA GAGACAAAGG
  AAAGATGAAG CAGAGCCAAG GGGGAGACAC TAGTGTGGCC TGTCGCCTTC CATCTGGCTA
  CAGTCTCCAC CACAGCTTAC TTGTTCTGAC CTCAGTGATG CAATGGATGG TGGCTGTTTG
  AAAGTTGTTG GAAGTACTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48076218	NES12085641	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G	A		G
ss325033155	CHEV_15_81854441	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31670044					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076218	NES12085641	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81908212 () rs orientation: forward

Symbol	Name	Function Class
Rr304582	regulatory region 304582	389 bp proximal
Rr314730	regulatory region 314730	1012 bp distal
Tssr132329	transcription start site region 132329	1285 bp downstream
Tssr132330	transcription start site region 132330	1254 bp downstream
Tssr132331	transcription start site region 132331	1210 bp downstream
Tssr132332	transcription start site region 132332	1171 bp downstream
Tssr132333	transcription start site region 132333	1139 bp downstream
Tssr132334	transcription start site region 132334	1077 bp downstream
Tssr132335	transcription start site region 132335	1046 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates