rs31670299 SNP Detail

Summary

• ID
  rs31670299
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81911056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGGGCA TCAGATTTCA
  TTACAAATGG TTGTGAGCCA CCATGTGGTT GCTGGGATTT GAACCCAGGA TCTTCGGAAG
  AACAGTCAGT GCTCTTAACC CCCGAGCCAT CTTGCCAGCC CTGTTAGATT TTATTTATTT
  ATTTATTTAT TTATTTATTA AAGACAGGGT CTTGCTGTGT ATTCTAAGCT GGGTTTTCAG
  M
  TGTCTACTAT CATGCTTGAC CACGTTTTAC CTTTTCTCCA CCTCTCCACT TGTTTGTTCT
  TATTACTGTT TGGGACAGAG TCTTGTGTGT AGACCTGCGT ACCTGGTACT TGGTCATATT
  TGTTCCCCGT GCTGGCCTTG AATTCAGGGC GTCTTACTGT CTTAGTCCCT CACCTGCTGG
  GATTGGCCAT GTGCCCCCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48076230	NES12085461	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31670299					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076230	NES12085461	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81911056 () rs orientation: forward

Symbol	Name	Function Class
Rr506381	regulatory region 506381	787 bp proximal
Tssr132336	transcription start site region 132336	1170 bp upstream
Tssr132337	transcription start site region 132337	1199 bp upstream
Tssr132338	transcription start site region 132338	1234 bp upstream
Tssr132339	transcription start site region 132339	1256 bp upstream
Tssr132340	transcription start site region 132340	1653 bp upstream
Tssr135523	transcription start site region 135523	994 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates