rs31670303 SNP Detail

Summary

• ID
  rs31670303
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81911302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTTGTTT GTTCTTATTA
  CTGTTTGGGA CAGAGTCTTG TGTGTAGACC TGCGTACCTG GTACTTGGTC ATATTTGTTC
  CCCGTGCTGG CCTTGAATTC AGGGCGTCTT ACTGTCTTAG TCCCTCACCT GCTGGGATTG
  GCCATGTGCC CCCATGCCCA GTGCTGAACT CTGTTTGCAG CCCATTCACT ATTTGTGTTT
  K
  GACTAAGGTT ATTGGACAGA GTAACGCAGA CTGGAACTTG GATGCTGTGA AAACCTTTTA
  CATAGGAAAG TACAGTCTGC TCGCTCATAC TTGCTTTGTT TCTCTTTCCC TTTCCTCCCC
  CAGGTTAAAG TTTAAGCTCG GTGAAGACGT AGTACTCATG GTGGGCATTT ATAACTTGGT
  CCAGAAAGCT AACAAGCCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48076236	NES12085442	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31670303					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076236	NES12085442	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81911302 () rs orientation: forward

Symbol	Name	Function Class
Rr506381	regulatory region 506381	541 bp proximal
Tssr132336	transcription start site region 132336	924 bp upstream
Tssr132337	transcription start site region 132337	953 bp upstream
Tssr132338	transcription start site region 132338	988 bp upstream
Tssr132339	transcription start site region 132339	1010 bp upstream
Tssr132340	transcription start site region 132340	1407 bp upstream
Tssr135523	transcription start site region 135523	748 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates