rs31670337 SNP Detail

Summary

• ID
  rs31670337
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:81912193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGAGACCA TGTCTGGGCG
  AAAGAAAACC AGACAGACAC ACTGAGCAAG CTAGCCAGTG AAGTAAGTCA CTGTAAACTG
  CGTCTTTCTG GATAAACGGT CAGGACAGGA AGCAGCTGGC CTTGCAGCTA TGGCATATGT
  CAAGGAACAG GCCAGGTGTT GGTGGCTTGC TTAGCACACA CTACTGTAAC CGTTTAAGTA
  S
  AGCGACAACA AGAGCTTTGT GGTTACCCCA GGTGGTGAGG AGTTAGAGTT TATACATGCA
  GTGGGCTATT CGTTTGTGAG AAATTCTCCT TGCTGAACTA GTCAGATTTT TTTCCCCTTC
  CTTTGAAATG ACCACATCTG TTTTTCTGAG CATGAGAAGA AGGTACAGTA CATTCTCTCT
  CTCTCTCTCT CCCTCTCCGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48076240	NES12085398	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31670337					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076240	NES12085398	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81912193 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr506381	regulatory region 506381			within coordinates
Tssr132336	transcription start site region 132336			33 bp upstream
Tssr132337	transcription start site region 132337			62 bp upstream
Tssr132338	transcription start site region 132338			97 bp upstream
Tssr132339	transcription start site region 132339			119 bp upstream
Tssr132340	transcription start site region 132340			516 bp upstream
Tssr132341	transcription start site region 132341			1211 bp upstream
Tssr135523	transcription start site region 135523			132 bp upstream
Tssr135524	transcription start site region 135524			1594 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6			Intron
				Noncoding-Transcript-Variant