rs31670339 SNP Detail

Summary

• ID
  rs31670339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81912607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCTCTC GTCCTCTCTC
  TGCTGTACAT TCTTTACCAG GATGTGATAT TGAAAAGCAA GCATGACCTT TTGTTATTTT
  GAGATGGGTT CTCACTCTGT AGACCAGACT GGCCTTGGAT TCAGAGATCC ACTTGCCTGT
  CTCCCTACTG CTATGATTAA ACGCATGCCC CACCATGCCT GGCTGAACAC ATCCTTTTTA
  R
  TTACGTAAAA TGTGGGAGAG GATCACATTT TTATATACGT TCAGGACCCA ACTGAATAAA
  AGAAATATTT TTATTCAATC TATGAGGGTT TTTTTTTTTT TTGTCTTTCT GTTTGAGTAT
  AAATTTCATA CCAGATGGTT TCTCCTGCTG CTTGAAGGAT ATGAGGTATA AGGCATGTTC
  TTCTATTTGT AAGGGACTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48076242	NES12085361	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31670339					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076242	NES12085361	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81912607 () rs orientation: forward

Symbol	Name	Function Class
Rr506381	regulatory region 506381	264 bp distal
Tssr132336	transcription start site region 132336	360 bp downstream
Tssr132337	transcription start site region 132337	331 bp downstream
Tssr132338	transcription start site region 132338	312 bp downstream
Tssr132339	transcription start site region 132339	273 bp downstream
Tssr132340	transcription start site region 132340	102 bp upstream
Tssr132341	transcription start site region 132341	797 bp upstream
Tssr135523	transcription start site region 135523	546 bp upstream
Tssr135524	transcription start site region 135524	1180 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates