rs31670385 SNP Detail

Summary

• ID
  rs31670385
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81912819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGAGAGG ATCACATTTT
  TATATACGTT CAGGACCCAA CTGAATAAAA GAAATATTTT TATTCAATCT ATGAGGGTTT
  TTTTTTTTTT TGTCTTTCTG TTTGAGTATA AATTTCATAC CAGATGGTTT CTCCTGCTGC
  TTGAAGGATA TGAGGTATAA GGCATGTTCT TCTATTTGTA AGGGACTAGA TTGTCAGATG
  R
  ACTTATGGGG CAGCCACTCT CTGACCACTG AGTTTCTTTA TTAACCCACT CGCCTGAATA
  AATCTGAAGG GCCTTTTGTT GTTGTTATAA ACTCAAATTT GACTCTGCCA CTATGTGTGC
  TATCCACTTG CCTGTAGAGG CCAGAGGAGG ACATTGTGTC TGCTCTGTTC CCCTCCTCCT
  CGGTTCTTTG AGACAGGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48076248	NES12085367	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31670385					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076248	NES12085367	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81912819 () rs orientation: forward

Symbol	Name	Function Class
Rr506381	regulatory region 506381	476 bp distal
Rr506382	regulatory region 506382	1943 bp proximal
Tssr132336	transcription start site region 132336	572 bp downstream
Tssr132337	transcription start site region 132337	543 bp downstream
Tssr132338	transcription start site region 132338	524 bp downstream
Tssr132339	transcription start site region 132339	485 bp downstream
Tssr132340	transcription start site region 132340	106 bp downstream
Tssr132341	transcription start site region 132341	585 bp upstream
Tssr135523	transcription start site region 135523	758 bp upstream
Tssr135524	transcription start site region 135524	968 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates