rs31670389 SNP Detail

Summary

• ID
  rs31670389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81913472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGG CCCTCTCTGT TCGTGTACCC
  R
  GAGGAGTCCC TGGTCAGTGG TGAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48076252	NES12085328	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A	G	A	A		G	A	A	G		G
ss148229786	ENSMUSSNP1844039	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss325033196	CHEV_15_81859701	CHEVERUD	SCREENING_POP	f	SNP										A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31670389					SNP	G	A	A	A	G	A	G	A	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076252	NES12085328	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81913472 () rs orientation: forward

Symbol	Name	Function Class
Rr506381	regulatory region 506381	1129 bp distal
Rr506382	regulatory region 506382	1290 bp proximal
Tssr132336	transcription start site region 132336	1225 bp downstream
Tssr132337	transcription start site region 132337	1196 bp downstream
Tssr132338	transcription start site region 132338	1177 bp downstream
Tssr132339	transcription start site region 132339	1138 bp downstream
Tssr132340	transcription start site region 132340	759 bp downstream
Tssr132341	transcription start site region 132341	58 bp downstream
Tssr135523	transcription start site region 135523	1411 bp upstream
Tssr135524	transcription start site region 135524	315 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates