rs31670390 SNP Detail

Summary

• ID
  rs31670390
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81913811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGC TCACCAAGTG TGTGGAGAAG
  R
  AGGTCATAGC AGTGTGTAGA TACAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39340410	mCV25425672	ABI	CRAMUS_MOUSE	f	SNP		G	A					G	A
ss48076254	NES12085333	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		A	A	A		A	A	A	A		G
ss148229791	ENSMUSSNP5659561	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss325033199	CHEV_15_81860040	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31670390					SNP	G	G	A	A	A	G	A	G	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076254	NES12085333	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81913811 () rs orientation: forward

Symbol	Name	Function Class
Rr506381	regulatory region 506381	1468 bp distal
Rr506382	regulatory region 506382	951 bp proximal
Tssr132336	transcription start site region 132336	1564 bp downstream
Tssr132337	transcription start site region 132337	1535 bp downstream
Tssr132338	transcription start site region 132338	1516 bp downstream
Tssr132339	transcription start site region 132339	1477 bp downstream
Tssr132340	transcription start site region 132340	1098 bp downstream
Tssr132341	transcription start site region 132341	397 bp downstream
Tssr135523	transcription start site region 135523	1750 bp upstream
Tssr135524	transcription start site region 135524	6 bp upstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates