rs31670566 SNP Detail

Summary

• ID
  rs31670566
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:137849770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCT GCAGAGGCAC TACAGCGCAC
  R
  CGCACACACT TGCTGAAGTG TAGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45057287	mCV23222519	ABI	CRAMUS_MOUSE	f	SNP		A				G		A
ss49506922	NES12870022	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G		G	A	A	A		G	A	G	G		G
ss145574360	ENSMUSSNP4453797	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						A
ss319999470	CHEV_1_139818609	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31670566					SNP	A	A	G	G	G	G	G	A	A	A	A	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49506922	NES12870022	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:137849770 () rs orientation: forward

Symbol	Name	Function Class
Gm4258	predicted gene 4258	within coordinates
Gm26936	predicted gene, 26936	within coordinates
Gm41959	predicted gene, 41959	within coordinates
Mir181a-1hg	Mir181a-1 and Mir181b-1 host gene	within coordinates
Rr396330	regulatory region 396330	784 bp upstream
Rr419641	regulatory region 419641	759 bp proximal
Rr419642	regulatory region 419642	1843 bp proximal
Tssr9117	transcription start site region 9117	1338 bp downstream
Tssr9118	transcription start site region 9118	1132 bp downstream