rs31670568 SNP Detail

Summary

• ID
  rs31670568
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180469976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTAGCCCTTG GTCAACGAAA GGTTCGCAGG TGTGGTGGCG
  CACATCTTTA ATCTCAGCAC TCGGTAGGAA GAGGCAGGTG GATCTCCGAG TTCGAGGCCC
  R
  CCCAGTCTAC ATACCAAGCT CCAGGACAGC CAAGGCTACA CAGAGAAATC CTGTCTTGGA
  AAACAAACAA ACAAACAAAC CTCCAAACTG AGCAATCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45057289	mCV22719632	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss146384509	ENSMUSSNP5544556	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31670568					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180469976 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1114	CpG island 1114	311 bp distal
Lin9	lin-9 DREAM MuvB core complex component	within coordinates
Rr29091	regulatory region 29091	within coordinates
Tssr10481	transcription start site region 10481	1705 bp downstream
Tssr10482	transcription start site region 10482	1037 bp downstream