rs31670670 SNP Detail

Summary

• ID
  rs31670670
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74024677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGGCATTC AAAAAGGCAA TGTGTCTTAA
  ACTATGGCAA GCAGGATTGG CATTAGGACT GGGAGTGTCT TTGTCACTAG TCTAGAGCTA
  GAAGGTCACA GTTCACACTG AGTGGCAGTT CCCTGAAGAT GTCCCAGAGC AAAAGATGAA
  R
  CTAGGAAAAG AATATTCTCT CCAAGGGAAG AAGTTGGATC ATGATGATGT GTGTCTGGGA
  GGGATACAGG AACCCACAGT TCTAAACTCA AGCTTACAGG GGAATAGTCG CATGTCCCAT
  GTCCCCAGGG TAGGTCAGGA ACAGGACAAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45057313	mCV23137748	ABI	CRAMUS_MOUSE	f	SNP		A	G						A
ss51276052	NES14516453	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	A	G	G	A	A	A		G	G	A	G		G
ss144681600	ENSMUSSNP2120072	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
ss319793226	CHEV_1_74032092	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31670670					SNP	A	A	G	A	A	A	G	G	A	A	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276052	NES14516453	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74024677 () rs orientation: forward

Symbol	Name	Function Class
Rr17340	regulatory region 17340	677 bp distal
Rr17341	regulatory region 17341	924 bp proximal
Rr27623	regulatory region 27623	1072 bp proximal
Rr34548	regulatory region 34548	1692 bp proximal
Tns1	tensin 1	within coordinates
Tssr12228	transcription start site region 12228	1021 bp upstream
Tssr12229	transcription start site region 12229	1276 bp downstream