rs31670882 SNP Detail

Summary

• ID
  rs31670882
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:48533307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGAGGTT TAAAGTCTTG
  ACGCTGTCAG TCATGAGACC TTGAAAAGGA AGCAAGGATC TTGGGATTTA GCTCAGGGCA
  GAGGGATTAC TTAACAGGCT CAAGGCCCCA GGGGTCATCT CCAGCATCAT ACGCAAGTAT
  AGTGCGTCAA TTTGAAGTTT GGTGTGATTT TAAAGGAAAG ATGACCGCAG AATACCTTCC
  W
  GCTTACTGTG CAAACGAGGG GTTGGAGGAC AAGCTTGAAG TCACTTTTCT TACTTTCCCT
  TCAAATCTTA TTTTTTTGTT ATTGATTATA TAACCCAAGA AGATTTCCAT GCCTTTGTGT
  CTGGTCATAT GAGTTGCACA ATAGCTCATA TCTCACTGAG CTGGGCCAGT TTTTCCACCC
  CACTGTCACT CTTCTGTGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46056647	mCV23857833	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A	A
ss149208235	ENSMUSSNP2073457	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31670882					SNP	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:48533307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19137	CpG island 19137	1086 bp distal
E2f8	E2F transcription factor 8	1963 bp upstream
Gm2788	predicted gene 2788	within coordinates
Rr400336	regulatory region 400336	1609 bp downstream
Rr646939	regulatory region 646939	1974 bp distal
Rr646940	regulatory region 646940	1473 bp distal
Tssr66769	transcription start site region 66769	1693 bp downstream
Tssr66770	transcription start site region 66770	1250 bp upstream
Tssr72633	transcription start site region 72633	1940 bp upstream
Tssr72634	transcription start site region 72634	1888 bp upstream
Tssr72635	transcription start site region 72635	1205 bp upstream
Tssr72636	transcription start site region 72636	216 bp upstream