rs3167094 SNP Detail

Summary

• ID
  rs3167094
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148709557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGT CTAACCATGG CCAGCAATAC
  R
  GCAAAACCAA AATGATTAAC AAACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss37803042	NES09112328	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G		G	G	A	G		G	G	G
ss45656896	mCV24948150	ABI	CRAMUS_MOUSE	f	SNP	G	G					A		G
ss148013232	ENSMUSSNP2462651	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss321421539	CHEV_4_147999209	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs3167094					SNP	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803042	NES09112328	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148709557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15308	CpG island 15308	647 bp proximal
Rr100545	regulatory region 100545	356 bp distal
Rr100546	regulatory region 100546	within coordinates
Rr398860	regulatory region 398860	1849 bp upstream
Tardbp	TAR DNA binding protein	within coordinates
Tssr44612	transcription start site region 44612	1631 bp downstream
Tssr44613	transcription start site region 44613	1656 bp downstream
Tssr44614	transcription start site region 44614	1909 bp downstream