rs3167098 SNP Detail

Summary

• ID
  rs3167098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148710574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAAG TTTCTTCTAT AGCCTGGACC
  Y
  GAATCGGGTT TAGCACGTGC TTTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss37803038	NES09112310	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	T	T	C		T	C	C
ss321421543	CHEV_4_148000226	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs3167098					SNP	C	C	C	C	C	T	T	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803038	NES09112310	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148710574 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15308	CpG island 15308	within coordinates
Rr100545	regulatory region 100545	1373 bp distal
Rr100546	regulatory region 100546	within coordinates
Rr398860	regulatory region 398860	832 bp upstream
Tardbp	TAR DNA binding protein	within coordinates
Tssr44612	transcription start site region 44612	614 bp downstream
Tssr44613	transcription start site region 44613	639 bp downstream
Tssr44614	transcription start site region 44614	892 bp downstream