rs3167099 SNP Detail

Summary

• ID
  rs3167099
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148710951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGG CGGCCACACA CTTCCGCCCG
  Y
  GGCTTCACAG CCAAGCAGAG GCCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss37803036	NES09112312	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	T	C		C	C	C
ss148013263	ENSMUSSNP2834836	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						C
ss321421545	CHEV_4_148000603	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs3167099					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37803036	NES09112312	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148710951 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr398860	regulatory region 398860			455 bp upstream
Rr604712	regulatory region 604712			within coordinates
Rr604713	regulatory region 604713			809 bp distal
Rr604714	regulatory region 604714			254 bp proximal
Tardbp	TAR DNA binding protein			Intron
				Noncoding-Transcript-Variant
Tssr44612	transcription start site region 44612			237 bp downstream
Tssr44613	transcription start site region 44613			262 bp downstream
Tssr44614	transcription start site region 44614			515 bp downstream