rs31671454 SNP Detail

Summary

• ID
  rs31671454
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122557591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGG TATTTTTACC ATCCAAAAGC
  Y
  GCTGTTTGTG TTTGTGGTGG TAGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47577244	NES11179101	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C	C	C	T	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31671454					SNP	T	C	C	C	T	C	C	C	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47577244	NES11179101	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122557591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21206	CpG island 21206	982 bp distal
Gm24283	predicted gene, 24283	310 bp downstream
Gm64252	predicted gene, 64252	537 bp downstream
Klhdc4	kelch domain containing 4	1283 bp upstream
Rr368654	regulatory region 368654	1136 bp downstream
Rr401186	regulatory region 401186	1752 bp upstream
Rr671929	regulatory region 671929	1158 bp distal
Rr671930	regulatory region 671930	569 bp distal
Rr671931	regulatory region 671931	1511 bp proximal
Rr671932	regulatory region 671932	1871 bp proximal
Tssr79828	transcription start site region 79828	1163 bp downstream
Tssr83245	transcription start site region 83245	1337 bp upstream
Tssr83246	transcription start site region 83246	1281 bp upstream