rs31671457 SNP Detail

Summary

• ID
  rs31671457
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122557621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCCCAAC TTCATTCCAT
  ACTTTTCAAA GATGAAATTG AAATTGTCTT CAGAAAGCTC ATCTCAGCTA GAACCTATCT
  GTAGAGTTAT CCCAGGTGTG CATCCCTTAA CAGCCCTATC TCACTCCCAA AGGAAAAGCC
  AATCAGGGGG TATTTTTACC ATCCAAAAGC CGCTGTTTGT GTTTGTGGTG GTAGGGTATC
  W
  AGGTGGAGTT TGGTGAGGGG AAAGAATCTG ATTAAAATAT ATTTTATACA AACACACACA
  CACACACAAA CCAAAAAACA GCTGGGCAGT GATAGCACAG CCTTGAATCC TGGCACTCAG
  GAAGCAGAGA TAGTTGGATC TCTATGAATT CAAGGCCAGC CTGATCTATA AAGAGAGTTT
  CAGGACAGCC AAGGCCACAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47577247	NES11179103	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A		T	A	A	T		A
ss322845220	CHEV_8_124354782	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31671457					SNP	A	A	A	A	A	A	T	A	A	A	T	T	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47577247	NES11179103	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122557621 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21206	CpG island 21206	1012 bp distal
Gm24283	predicted gene, 24283	340 bp downstream
Gm64252	predicted gene, 64252	567 bp downstream
Klhdc4	kelch domain containing 4	1313 bp upstream
Rr368654	regulatory region 368654	1166 bp downstream
Rr401186	regulatory region 401186	1722 bp upstream
Tssr79828	transcription start site region 79828	1193 bp downstream
Tssr83245	transcription start site region 83245	1367 bp upstream
Tssr83246	transcription start site region 83246	1311 bp upstream