rs31671463 SNP Detail

Summary

• ID
  rs31671463
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122557992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATAGATAGA TACAAGAGAG AGAGAGAGAG AGAGAGAGAG
  AGATCTAAAA GACCAAAGAA ATTATTCCAA GTCCAGTAGC TTGGACTCAG TAGCTTGTTG
  R
  AGTACTGAGT TGTTTGTTTT GATTTACAGG AGCACAGGTG ACTCGAAGGC AGCCACGTCT
  CATAAACGTC TCACCTAGCA TGGGTGGATG AGGAATTTAT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss47577253	NES11179057	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs31671463					SNP	A	A	A	G	A	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47577253	NES11179057	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122557992 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21206	CpG island 21206	1383 bp distal
Gm24283	predicted gene, 24283	711 bp downstream
Gm42047	predicted gene, 42047	1885 bp upstream
Gm64252	predicted gene, 64252	938 bp downstream
Klhdc4	kelch domain containing 4	1684 bp upstream
Rr368654	regulatory region 368654	1537 bp downstream
Rr401186	regulatory region 401186	1351 bp upstream
Rr671929	regulatory region 671929	1559 bp distal
Rr671930	regulatory region 671930	970 bp distal
Rr671931	regulatory region 671931	1110 bp proximal
Rr671932	regulatory region 671932	1470 bp proximal
Tssr79828	transcription start site region 79828	1564 bp downstream
Tssr83245	transcription start site region 83245	1738 bp upstream
Tssr83246	transcription start site region 83246	1682 bp upstream