rs31671669 SNP Detail

Summary

• ID
  rs31671669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122558183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTGTTGA AGTACTGAGT
  TGTTTGTTTT GATTTACAGG AGCACAGGTG ACTCGAAGGC AGCCACGTCT CATAAACGTC
  TCACCTAGCA TGGGTGGATG AGGAATTTAT AAACATTGTA TCACTGGTAC CCAAGCCACC
  TCCCACCTCC TGTACAGCCT GGCACTAAGC TCCTGGCAGC TGAGGCGGCT GAGCGAGGAG
  Y
  GGTTGGAGTC TCTAGTGAGA GTCTGTGGTC GCCCCTTCCT TCTGCAGGAG AAAATGAAAA
  GACCCAATGT TGTAAGAGGC TATTAACATT CTCCACTGTT CGCAATATAT AGCACTGTTC
  CTTCTTCAGG GCTGAAAGGG AAAGTATATC CTCTGCGGAA GATTTAGAAA GATCTGGAAG
  TTGCAGGGAT TAATGCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47577259	NES11179022	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C		C	C	T		C
ss322845224	CHEV_8_124355344	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31671669					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47577259	NES11179022	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122558183 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21206	CpG island 21206	1574 bp distal
Gm24283	predicted gene, 24283	902 bp downstream
Gm42047	predicted gene, 42047	1694 bp upstream
Gm64252	predicted gene, 64252	1129 bp downstream
Klhdc4	kelch domain containing 4	1875 bp upstream
Rr368654	regulatory region 368654	1728 bp downstream
Rr401186	regulatory region 401186	1160 bp upstream
Rr671929	regulatory region 671929	1750 bp distal
Rr671930	regulatory region 671930	1161 bp distal
Rr671931	regulatory region 671931	919 bp proximal
Rr671932	regulatory region 671932	1279 bp proximal
Tssr79828	transcription start site region 79828	1755 bp downstream
Tssr83245	transcription start site region 83245	1929 bp upstream
Tssr83246	transcription start site region 83246	1873 bp upstream