rs31672054 SNP Detail

Summary

• ID
  rs31672054
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:27133160 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  ACTCGAGCAT CAGACTTTTT ATGCAGAGGA CAATAAGGAA GTTGGGTGAC ATATTCGCAA
  GGTACAATTG AGGTAACCGG AATCTTACAT AAAACAGAGG AATGCAAACA CAAAAGGTCT
  AACGGGAACC ACCCAGGATA GAATACATTG ATATCAGCTG GGATCAACGA AGGCTCCACC
  TAAAATTCAC TAATCTTAGA AGCCAGGGTC AAGGGCTTCG CGTCCTTGCC ATAGTTCCTA
  TTTTAGTCTC TTGTATAGTC CACCTTCCCC TTAGGCCATT GTAAATATGT GTATGGGTGT
  M
  ACTCTGCTAT AGTATCTATT CTGGTTTCTC CTTTGGTCTG AAACTTCCTT CTTCCTAAGC
  GATGGTAAAT TCCTGTGTAA GGGAGTGACT TAGCTTTTAC AATCTTGCTG AATTCTAAAC
  CCTTGATCTT GGTCAAGGAT GCCCTTGGAC TGTTGGAACA CTGGGGGAAG GCTTTAGCCA
  TGTCAGAGCA CTTATAGGAA AATACTGAAA GAGAGCACGT GGATCCATAC TCTAGACTAG
  CGTGGTACTG GAACTCGGGA ATGAAAAATT AATGTATGGG TAGAGAACAC TAGCCTCCAG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45058020	mCV24081121	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31672054					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:27133160 () rs orientation: reverse

Symbol	Name	Function Class
Rr376259	regulatory region 376259	within coordinates