rs31672159 SNP Detail

Summary

• ID
  rs31672159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122558446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAATGTTG TAAGAGGCTA
  TTAACATTCT CCACTGTTCG CAATATATAG CACTGTTCCT TCTTCAGGGC TGAAAGGGAA
  AGTATATCCT CTGCGGAAGA TTTAGAAAGA TCTGGAAGTT GCAGGGATTA ATGCTTTTAT
  TATCTGAAAG AATCTCAAAG CTAAATTGGG AAGCTCTTAA TACAGGTCAC AGTGATTCAC
  Y
  AGAGGTTAAA ATTTTCATTA CTAGGAAAGA CACAGAATAA AACTGCTTTG ATTTATTTCC
  TCCCTCCCCT ATTTTCTTTT TTGGCTGTTG TTTGTTTTTG TTTTTGTTTT TTTACGACAG
  GTTTTTCTGT GTATCCCTGG CTGTTCTGAA ACCCTCTCTT TAGACTAGGC TAGCCTTGAA
  CTCAGATATT CAGTGACCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47577280	NES11179029	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	C	C	T		C
ss322845231	CHEV_8_124355607	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31672159					SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47577280	NES11179029	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122558446 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21206	CpG island 21206	1837 bp distal
Gm24283	predicted gene, 24283	1165 bp downstream
Gm42047	predicted gene, 42047	1431 bp upstream
Gm64252	predicted gene, 64252	1392 bp downstream
Rr368654	regulatory region 368654	1991 bp downstream
Rr401186	regulatory region 401186	897 bp upstream
Rr671930	regulatory region 671930	1424 bp distal
Rr671931	regulatory region 671931	656 bp proximal
Rr671932	regulatory region 671932	1016 bp proximal