rs31672162 SNP Detail

Summary

• ID
  rs31672162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122558732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGTTTGT TTTTGTTTTT
  GTTTTTTTAC GACAGGTTTT TCTGTGTATC CCTGGCTGTT CTGAAACCCT CTCTTTAGAC
  TAGGCTAGCC TTGAACTCAG ATATTCAGTG ACCTCCCAAG TGCTGTGACT AAAGGCATGA
  GCCACACTGC CCAGCCAAAA CAGCTCTGAT TTCAAGATAG AGACAGAAAT ATCATGCCTG
  R
  AGGAGAGAAT TCTCCAAAAG TTCTACAAAA GGAAAAAGAG GAGGGGAGAG AAGAGAGGAA
  CCAAATGAAG GCTCTGCTGA TCTCCAAGAC TGCTTGCAGA TCATGTGTAA TGCTAGAGGG
  GGAAAATAGT TACCGGATCA GAGATAGCCA GCCACTGGAG CTGAGCCTCC AGACCCCTTC
  TGCACTGTAG CAACAGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47577283	NES11178977	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G	A		G
ss322845234	CHEV_8_124355893	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31672162					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47577283	NES11178977	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122558732 () rs orientation: forward

Symbol	Name	Function Class
Gm24283	predicted gene, 24283	1451 bp downstream
Gm42047	predicted gene, 42047	1145 bp upstream
Gm64252	predicted gene, 64252	1678 bp downstream
Rr401186	regulatory region 401186	611 bp upstream