rs31672452 SNP Detail

Summary

• ID
  rs31672452
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:13444576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCT GGCGAGACTT CAGAGCTCGG
  R
  GAGTTGGACA AGATGGGTGG CTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45057893	mCV23396720	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss148622295	ENSMUSSNP1142723	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs31672452					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:13444576 () rs orientation: forward

Symbol	Name	Function Class
Cpgi41	CpG island 41	within coordinates
Gm29570	predicted gene 29570	within coordinates
Gm51852	predicted gene, 51852	1850 bp downstream
Gm70663	predicted gene, 70663	within coordinates
Ncoa2	nuclear receptor coactivator 2	269 bp upstream
Rr395968	regulatory region 395968	1644 bp downstream
Rr407893	regulatory region 407893	1924 bp distal
Rr407894	regulatory region 407894	1843 bp distal
Rr407895	regulatory region 407895	280 bp distal
Rr407896	regulatory region 407896	659 bp distal
Rr407897	regulatory region 407897	within coordinates
Rr407898	regulatory region 407898	72 bp distal
Rr407899	regulatory region 407899	355 bp proximal
Tssr5965	transcription start site region 5965	1434 bp downstream
Tssr10989	transcription start site region 10989	1895 bp upstream
Tssr10990	transcription start site region 10990	688 bp upstream
Tssr10991	transcription start site region 10991	461 bp upstream
Tssr10992	transcription start site region 10992	283 bp upstream
Tssr10993	transcription start site region 10993	277 bp upstream
Tssr10994	transcription start site region 10994	170 bp upstream
Tssr10995	transcription start site region 10995	89 bp upstream
Tssr10996	transcription start site region 10996	44 bp downstream
Tssr10997	transcription start site region 10997	80 bp downstream