rs31673077 SNP Detail

Summary

• ID
  rs31673077
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122558867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAGCCAC ACTGCCCAGC
  CAAAACAGCT CTGATTTCAA GATAGAGACA GAAATATCAT GCCTGGAGGA GAGAATTCTC
  CAAAAGTTCT ACAAAAGGAA AAAGAGGAGG GGAGAGAAGA GAGGAACCAA ATGAAGGCTC
  TGCTGATCTC CAAGACTGCT TGCAGATCAT GTGTAATGCT AGAGGGGGAA AATAGTTACC
  S
  GATCAGAGAT AGCCAGCCAC TGGAGCTGAG CCTCCAGACC CCTTCTGCAC TGTAGCAACA
  GGCTGCTCTG CCCACTGCTC AGGTGAACCG CTGTTTCTAA CAAGCTCTAA CCTAAAACAT
  CTCTTATCCT CCTCATTGTT CTGAAAATAT TAGGTAACCT CTGAGCACCA CACTTAAAGT
  GGAACAGGCC TTCAAAGAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47577289	NES11178979	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G		C	G	G	C		G
ss322845236	CHEV_8_124356028	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31673077					SNP	G	G	G	G	G	G	C	G	G	G	C	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47577289	NES11178979	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122558867 () rs orientation: forward

Symbol	Name	Function Class
Gm24283	predicted gene, 24283	1586 bp downstream
Gm42047	predicted gene, 42047	1010 bp upstream
Gm64252	predicted gene, 64252	1813 bp downstream
Rr401186	regulatory region 401186	476 bp upstream