rs31673429 SNP Detail

Summary

• ID
  rs31673429
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154936231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTCCAGG CTCAGGTGCA GTCATTCCCA GCTTTTGATG
  TGGGCTAGGA TCCAAGTTCA GGCTCTCACT CTTGCCTACT GAGCCGTCAC TCCAGCCCTG
  Y
  GCTGTGCTTC TGTGCCTGTT AGTCTCTCCA TTCGAAAGAA ATGCAGGTCA GCTTCCAAAC
  ATTGACATCC TGCTTGGGCT AAAGAGATGG CACGTTTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45057801	mCV24610414	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss49516948	NES12844636	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T	T	C	C	C	C	C	T
ss145774522	ENSMUSSNP3501736	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31673429					SNP	C	C	C	C	C	C	C	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49516948	NES12844636	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154936231 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	598 bp distal
Gm41980	predicted gene, 41980	151 bp upstream
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	893 bp upstream
Rr396410	regulatory region 396410	626 bp downstream
Tssr248	transcription start site region 248	955 bp upstream
Tssr9521	transcription start site region 9521	775 bp downstream
Tssr9522	transcription start site region 9522	539 bp downstream
Tssr9523	transcription start site region 9523	1816 bp upstream
Tssr14331	transcription start site region 14331	940 bp upstream
Tssr14332	transcription start site region 14332	928 bp upstream
Tssr14333	transcription start site region 14333	910 bp upstream