rs31674400 SNP Detail

Summary

• ID
  rs31674400
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:4023871 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAC TAACGATACT GACAACTCAA
  K
  AAAAACATAT GACTGTTAAG CTAAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
ss39314049	mCV23812970	ABI	CRAMUS_MOUSE	f	SNP	T	G			G		T
ss49379134	NES12542490	PERLEGEN	MM_PANEL2	f	SNP		G	G	G		T	T	T	G
ss147038825	ENSMUSSNP991291	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
rs31674400					SNP	T	G	G	G	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49379134	NES12542490	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:4023871 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6911	CpG island 6911	972 bp proximal
Gm2093	predicted gene 2093	1650 bp upstream
Rimoc1	RAB7A interacting MON1-CCZ1 complex subunit 1	Intron
Rr369897	regulatory region 369897	701 bp upstream
Rr498628	regulatory region 498628	294 bp proximal
Rr498629	regulatory region 498629	1345 bp proximal
Rr498630	regulatory region 498630	1659 bp proximal
Tssr133595	transcription start site region 133595	855 bp downstream
Tssr133596	transcription start site region 133596	1319 bp downstream