rs31675170 SNP Detail

Summary

• ID
  rs31675170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30736067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCAGAAGAC AGTGGAAGGC AGGAGGAGCA TCAGGGGCTG
  ACCCAGGGAT GTGGATATAA TAACAGGGCT ACATCTGGGG TGCAGAGCAC AGGCACCTCC
  Y
  ACCCACACTA TGGCAACAAG CACCTGCCTG CACCCCCCGC CCCCCAAGGC TGGACCAGCT
  GCTCAGCCCA GGCGGGTCCC TCTTTTGGAC CTCCGCTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46057324	mCV22838222	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss148696866	ENSMUSSNP663581	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C	T
ss322138594	CHEV_7_31821661	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31675170					SNP	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30736067 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	201 bp upstream
Gm71772	predicted gene, 71772	347 bp upstream
Tssr2191	transcription start site region 2191	1157 bp upstream
Tssr65830	transcription start site region 65830	1374 bp downstream
Tssr65831	transcription start site region 65831	346 bp upstream
Tssr65832	transcription start site region 65832	766 bp upstream
Tssr65833	transcription start site region 65833	1163 bp upstream
Tssr65834	transcription start site region 65834	1217 bp upstream
Tssr71891	transcription start site region 71891	143 bp upstream
Tssr71892	transcription start site region 71892	376 bp downstream
Tssr71893	transcription start site region 71893	1218 bp downstream
Tssr71894	transcription start site region 71894	1239 bp downstream
Tssr71895	transcription start site region 71895	1252 bp downstream
Tssr71896	transcription start site region 71896	1282 bp downstream