rs31675271 SNP Detail

Summary

• ID
  rs31675271
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:86737534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACCAAGAC TCACAGAAAG AAAAAAAGTT GTTTTGCATC
  TAAGCCCCAA ACATCTGGAA CTCCCCCTCA ATGAAAATCT TACTACTTAA AGTTCAAACT
  M
  TATGAAATAG TACCTCGTTA TTTAAACAAG TTAATAATGA CAAAATCAAA CCAACAATAA
  ACCAGTAATG CAAAAATAGC TTTATATTTA TTCTTAAAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46593355	NES10431625	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	A	A	A	C	A		C	A	A	A		C
ss321598998	CHEV_5_87018700	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31675271					SNP	C	C	C	A	C	A	A	A	C	A	C	C	A	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46593355	NES10431625	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:86737534 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tmprss11f	transmembrane protease, serine 11f			Intron
				Noncoding-Transcript-Variant
Tssr51538	transcription start site region 51538			1758 bp downstream