rs31675273 SNP Detail

Summary

• ID
  rs31675273
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:86737684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCTGGAA CTCCCCCTCA
  ATGAAAATCT TACTACTTAA AGTTCAAACT CTATGAAATA GTACCTCGTT ATTTAAACAA
  GTTAATAATG ACAAAATCAA ACCAACAATA AACCAGTAAT GCAAAAATAG CTTTATATTT
  ATTCTTAAAG ACTATCTCAA GTTCTACAAA TGGCCAGGCC GTCTCATCCC ATTTATTTTC
  S
  TTCTTCCTAA TATTTATGTA AAAATAGGTC ATTTTGAGAT GTGAAGAACT TTCCCAGATA
  GAAGAGTGGA AAGCTGTCTC TAAAATACAT ATAAATAAAT ATTCCCTTTT TCCTCTTCAT
  CACCATGTCA CCTGGGGCCT TTTCTGAAAG CTGTGGCTTT CTTGCTCTGT ACTATCTGCC
  CTAGGGCAAG ACATTTTTTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45731137	mCV23427572	ABI	CRAMUS_MOUSE	f	SNP		G	C					C
ss46593357	NES10431627	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C		C	C	C	C	C	C	C	G
ss148782255	ENSMUSSNP2072688	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31675273					SNP	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46593357	NES10431627	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:86737684 () rs orientation: forward

Symbol	Name	Function Class
Tmprss11f	transmembrane protease, serine 11f	within coordinates
Tssr51538	transcription start site region 51538	1608 bp downstream