rs31675515 SNP Detail

Summary

• ID
  rs31675515
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:33702516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGACACTC AACTCATAAG
  CCACTAATAA AAAGAAACAA CCATATCTCT GACCAAAATT TAGTAAGGGG AAAAAAGTTA
  AATTGTAAAA AAGCAATTAA CTCCTTGTAC CTCTGGGTGG CAGCATTGAG TCACAATTAA
  CCAGCTACTG ACTGAAAATA GCTAAAATGT GATAAGCTCT TATATCTCTA ATTAGAAAAC
  K
  TTTACCAAAT TCAAGTGCAT GATTGAATGA ATGCTTATTA GTAATATTAC CACTCTTTCT
  TGAAAGAGTA TCAAAAGTAG CCTTCCTAAT GAAATCCCTT ATATACTTAA ATCCCAAATG
  CAGAGCCTCT CTCTCTCATT AGGTATCACC AATTATTTTC AGTATTTTCC AGTAAAAACT
  TATTTCAAAG AACGCACAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45057818	mCV24131942	ABI	CRAMUS_MOUSE	f	SNP		T	G					T	T
ss50934459	NES13474771	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	T	T	G		T	T	T	T	T	T	T
ss148875583	ENSMUSSNP4544974	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31675515					SNP	T	T	G	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50934459	NES13474771	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:33702516 () rs orientation: forward

Symbol	Name	Function Class
Prim2	DNA primase, p58 subunit	within coordinates
Rr15702	regulatory region 15702	within coordinates
Rr15703	regulatory region 15703	1485 bp proximal
Rr36335	regulatory region 36335	within coordinates
Rr395983	regulatory region 395983	89 bp downstream