rs31676265 SNP Detail

Summary

• ID
  rs31676265
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:86737835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATCTCAAG TTCTACAAAT
  GGCCAGGCCG TCTCATCCCA TTTATTTTCC TTCTTCCTAA TATTTATGTA AAAATAGGTC
  ATTTTGAGAT GTGAAGAACT TTCCCAGATA GAAGAGTGGA AAGCTGTCTC TAAAATACAT
  ATAAATAAAT ATTCCCTTTT TCCTCTTCAT CACCATGTCA CCTGGGGCCT TTTCTGAAAG
  Y
  TGTGGCTTTC TTGCTCTGTA CTATCTGCCC TAGGGCAAGA CATTTTTTAT AATAAATTTA
  GTGAATCCAC CAGCTCACCT CATACTGTCT TCATGAACAG TTTTGGATAG CATAACTGTG
  TTAAAAAAAA AAAACAAAAC AAAACAACTC TTGTCTAGAA GTCAATACTC AGAACTATGC
  ACTCTGAATC CAATCTGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
ss46593359	NES10431630	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ
rs31676265					SNP	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46593359	NES10431630	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:86737835 () rs orientation: forward

Symbol	Name	Function Class
Tmprss11f	transmembrane protease, serine 11f	within coordinates
Tssr51538	transcription start site region 51538	1457 bp downstream