rs31676792 SNP Detail

Summary

• ID
  rs31676792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:82046783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACGTGCTT ACTGTTCAGT
  TAGCTTTGGG GAGGGGTTGG TGGTTGCTTT TATGGTGGTG AAGACAGAAC CTTAGAGCTT
  ACTGAGCTCC GTGCCCAGAT CTCGTCCACT GACACTGAAA GCAGTGTGTG GCCGATTTTC
  CAAATCCCTT CTAACACACT TTCATTTCGC CTTTACTGTC ACTCCGGGTC TGTATGGTAT
  Y
  TTTCTCCCAA GTTGTGATTT ATATAAATGC AAAATAAAGA CATGTTTGGA AATCAGCGGT
  GGTAGTACAC ACCTTTAATC CCAGCACCCA GGAAGCAGAG GCAGGAGGAA CTCTGAGTTT
  GAGGCCAGCC TGGTCTACGG AGTAGGTTCT AGGACAGCCA GATACAGTAA CAGAGACACC
  CTATCTCAAA AAAAGAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48076880	NES12079052	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31676792					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076880	NES12079052	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82046783 () rs orientation: forward

Symbol	Name	Function Class
Rr404532	regulatory region 404532	1244 bp upstream
Rr506421	regulatory region 506421	913 bp distal
Rr506422	regulatory region 506422	35 bp distal
Rr506423	regulatory region 506423	1126 bp proximal
Rr506424	regulatory region 506424	1598 bp proximal
Srebf2	sterol regulatory element binding factor 2	Intron