rs31677101 SNP Detail

Summary

• ID
  rs31677101
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79973596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTATG TGGTAGCCTT TCCTTTATTT
  R
  TTTTGTTTGT TTGTTTTTGA GACAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
ss39314569	mCV22873955	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss325030238	CHEV_15_79919825	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
rs31677101					SNP	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79973596 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7362	CpG island 7362	1374 bp proximal
Gm24204	predicted gene, 24204	842 bp upstream
Gm31134	predicted gene, 31134	1338 bp downstream
Rr304341	regulatory region 304341	396 bp distal
Rr312104	regulatory region 312104	1204 bp proximal
Syngr1	synaptogyrin 1	1941 bp upstream
Tssr132156	transcription start site region 132156	1803 bp upstream
Tssr132157	transcription start site region 132157	1925 bp upstream
Tssr135417	transcription start site region 135417	492 bp upstream