rs31677857 SNP Detail

Summary

• ID
  rs31677857
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:86739754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGAAGTC ACACTTTTCC
  AGTTGGGGAG GTATGATCAG AATTGGGGTG AGGCCAGCCT CGGGTTTCTT TTTTTAAGCA
  AAACAAAACA CTAGTATATA CTGTTGCCAC TTCTTGCTAA ATTGTTAGAA ATTTTCCATC
  ACTTCCCTTT GAGGGAAACA TGAGGTGTGG GGGAGAAGAG TGGCCCTGAG GTATGGAGGA
  W
  AGCACCTGTG CCTGTCTCCT TGGTAGTGTG ACCATGGACA GTCCAATTAG CTTATCGCTG
  CTGATGTTCC CCACAAGCAA TATAATAAAA TTAATTTCAT CTAATTGTGG CCATTTTAGT
  TCTAAAGATA GAAATAAATT TCACTAAAGA TATGTTTATA CTCCAATGGA AAAACAGAAA
  AGTAAAACAA ACAACATTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46593383	NES10431660	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31677857					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46593383	NES10431660	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:86739754 () rs orientation: forward

Symbol	Name	Function Class
Tmprss11f	transmembrane protease, serine 11f	within coordinates
Tssr51538	transcription start site region 51538	423 bp upstream