rs31677858 SNP Detail

Summary

• ID
  rs31677858
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:86739797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGTGAGG CCAGCCTCGG
  GTTTCTTTTT TTAAGCAAAA CAAAACACTA GTATATACTG TTGCCACTTC TTGCTAAATT
  GTTAGAAATT TTCCATCACT TCCCTTTGAG GGAAACATGA GGTGTGGGGG AGAAGAGTGG
  CCCTGAGGTA TGGAGGATAG CACCTGTGCC TGTCTCCTTG GTAGTGTGAC CATGGACAGT
  S
  CAATTAGCTT ATCGCTGCTG ATGTTCCCCA CAAGCAATAT AATAAAATTA ATTTCATCTA
  ATTGTGGCCA TTTTAGTTCT AAAGATAGAA ATAAATTTCA CTAAAGATAT GTTTATACTC
  CAATGGAAAA ACAGAAAAGT AAAACAAACA ACATTTAACT TTTCTCACCA TCAGAAAAAT
  CTTAATAGAT TTTAGTGTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45766521	mCV23427590	ABI	CRAMUS_MOUSE	f	SNP		G	C						C
ss46593384	NES10431661	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C	C	C	C	C	C	C	C	C	G
ss148782280	ENSMUSSNP59502	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31677858					SNP	G	G	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46593384	NES10431661	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:86739797 () rs orientation: forward

Symbol	Name	Function Class
Tmprss11f	transmembrane protease, serine 11f	within coordinates
Tssr51538	transcription start site region 51538	466 bp upstream