rs31678357 SNP Detail

Summary

• ID
  rs31678357
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82048286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGTGAA AGAAAGCTGT
  GGGTGTTGGA GGGCTCAGGA CTGGGCAGGG CCGAGAAATG GCTCAGAGGA CCAAAATTCA
  GTTCCAAGCA CCTACAACCA TCTGTAACTA ACTTGAGCTC AAGGGGGAAT CTAACTGGTC
  CCCTGGAGCA CCCACATAAG CTGGACAGAC AGATGTTCAC GCTTCTTAAA TAAAGAGAGA
  R
  CAATTTGCAA GAAGGGCTGA AATGTGGTTT GTAGCTGGCA GGTGGCTCAG CAGTTCAGAG
  CACTTGCTGG TCTGTAGAGG GCCTGCGTTC AGTGGCCTGC ACTAGGAGGC AGCGCACAAC
  CATTTGTAAC TCTAGTTCCA GGCGTCTTGT TTGAACAATG GCTGTGCAGG TCAGATGGTG
  ATTGGTGTCT GACAGAAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss48076888	NES12078984	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs31678357					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076888	NES12078984	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82048286 () rs orientation: forward

Symbol	Name	Function Class
Rr404532	regulatory region 404532	within coordinates
Rr506422	regulatory region 506422	1538 bp distal
Rr506423	regulatory region 506423	356 bp distal
Rr506424	regulatory region 506424	95 bp proximal
Rr506425	regulatory region 506425	1388 bp proximal
Rr506426	regulatory region 506426	1391 bp proximal
Srebf2	sterol regulatory element binding factor 2	within coordinates