rs31678359 SNP Detail

Summary

• ID
  rs31678359
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82048780 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAAAACC TGTGGAAAGT
  CCTATTGAAA ATAGCTCTTC TGGGTGAGAC AGTTGAACGG GCTCCAGCCT TGGGCTATGG
  AGACTGGAGA AGTCAGTACT TCATTCCCTC CCCACCCCCC CTCCCCACCC CTCCCACCCC
  GAACTGCAGA GGTGCCTTCT GGGTGCCTGG GAAAGGAGGA GAGAGCCGGA CAGAGAGAAC
  Y
  AGGAGGCCAC ATTGAGTTGC TCTAGGTTTC TTGTGTGCTT TTTCTCTTGG GGGTGGGGTG
  TAGGCATGTG AATGTGCTGA TAGTGGAAGC CAGAGCAAAG CATGTAGCCT TGGCGGCATG
  GTAAACGCCA AGTTATATGG TAAGTTATAG AGTAACTTAC TGAACTGGGG GTCAGCTGTG
  AGTCATAAGC ACACTCAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ
ss48076890	NES12078930	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ
rs31678359					SNP	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48076890	NES12078930	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82048780 () rs orientation: forward

Symbol	Name	Function Class
Rr369971	regulatory region 369971	1604 bp upstream
Rr404532	regulatory region 404532	452 bp downstream
Rr506423	regulatory region 506423	850 bp distal
Rr506424	regulatory region 506424	378 bp distal
Rr506425	regulatory region 506425	894 bp proximal
Rr506426	regulatory region 506426	897 bp proximal
Srebf2	sterol regulatory element binding factor 2	within coordinates