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rs31678592 SNP Detail
Summary
  • ID
    rs31678592
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:19432031 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGTTCTAGAG GGAATTGGCT
CTCTCCTTCC ACTATGTTGG TCTCAGAGTT AAGTCTTCAA GCTTTATGAT AAGCACCTTT
ACCCACTAAG CCATCAATCC TCTTATAGTT AGGGGAAATC AAGGCCTAAA GAGTATATAA
AACAGCTGCT CAGGGCTATT GAATCTCAGA GAGGTCTCAG AACCGCCTCA GCCTCAACCC
R
CCAGCAGAAG AGATCTAGGG CTAGAATAGA GTCCACAGAG GAGCAGAAAA AGCGGCACCA
CAGCAAGTCC TTGCTCCATA CCTGTCAGCA ATGTGACCAA CAGCACGGCC CACAGAGCCT
TCATCTTCGC AATTGTGATT GGCCAGTCTG CGGAGGGAAA AATTGTCTTT GAACACCAGG
GGGCGGGGGT GGAGGGACTC                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss46057157 mCV25053648 ABI CRAMUS_MOUSE f SNP G A A
ss48163974 NES11834313 PERLEGEN MM_PANEL2 f SNP G A A A G G G A A A G G G G A
ss148481704 ENSMUSSNP2846348 ENSEMBL ENSEMBL_Sanger f SNP G A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs31678592 SNP G G A A A G G A G A A A G G G G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss48163974 NES11834313 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19432031 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E within coordinates
Cpgi18507 CpG island 18507 1028 bp distal
Cpgi18508 CpG island 18508 293 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 187 bp distal
Gm71725 predicted gene, 71725 within coordinates
Rr155346 regulatory region 155346 1431 bp distal
Rr155347 regulatory region 155347 1570 bp proximal
Rr167194 regulatory region 167194 within coordinates
Tssr2112 transcription start site region 2112 1645 bp downstream
Tssr2113 transcription start site region 2113 1615 bp downstream
Tssr2114 transcription start site region 2114 1489 bp downstream
Tssr2115 transcription start site region 2115 1461 bp downstream
Tssr2116 transcription start site region 2116 1391 bp downstream
Tssr2117 transcription start site region 2117 1337 bp downstream
Tssr2118 transcription start site region 2118 1242 bp downstream
Tssr2119 transcription start site region 2119 1265 bp upstream
Tssr2120 transcription start site region 2120 1192 bp downstream
Tssr2121 transcription start site region 2121 1166 bp downstream
Tssr2122 transcription start site region 2122 441 bp upstream
Tssr64880 transcription start site region 64880 1832 bp downstream
Tssr64881 transcription start site region 64881 1769 bp downstream
Tssr64882 transcription start site region 64882 1710 bp downstream
Tssr64883 transcription start site region 64883 1693 bp downstream
Tssr64884 transcription start site region 64884 1665 bp downstream
Tssr64885 transcription start site region 64885 1587 bp downstream
Tssr64886 transcription start site region 64886 1552 bp downstream
Tssr64887 transcription start site region 64887 1534 bp downstream
Tssr64888 transcription start site region 64888 1316 bp downstream
Tssr64889 transcription start site region 64889 1209 bp downstream
Tssr64890 transcription start site region 64890 1175 bp downstream
Tssr64891 transcription start site region 64891 1147 bp downstream
Tssr64892 transcription start site region 64892 1116 bp downstream
Tssr64893 transcription start site region 64893 1022 bp downstream
Tssr64894 transcription start site region 64894 608 bp downstream
Tssr64895 transcription start site region 64895 529 bp downstream
Tssr64896 transcription start site region 64896 505 bp downstream
Tssr70973 transcription start site region 70973 1777 bp upstream
Tssr70974 transcription start site region 70974 1744 bp upstream
Tssr70975 transcription start site region 70975 1719 bp upstream
Tssr70976 transcription start site region 70976 1667 bp upstream
Tssr70977 transcription start site region 70977 1646 bp upstream
Tssr70978 transcription start site region 70978 1623 bp upstream
Tssr70979 transcription start site region 70979 1615 bp upstream
Tssr70980 transcription start site region 70980 1601 bp upstream
Tssr70981 transcription start site region 70981 1577 bp upstream
Tssr70982 transcription start site region 70982 1548 bp upstream
Tssr70983 transcription start site region 70983 1527 bp upstream
Tssr70984 transcription start site region 70984 1467 bp upstream
Tssr70985 transcription start site region 70985 1432 bp upstream
Tssr70986 transcription start site region 70986 1403 bp upstream
Tssr70987 transcription start site region 70987 1358 bp upstream
Tssr70988 transcription start site region 70988 1339 bp upstream
Tssr70989 transcription start site region 70989 1301 bp upstream
Tssr70990 transcription start site region 70990 1282 bp upstream
Tssr70991 transcription start site region 70991 1252 bp upstream
Tssr70992 transcription start site region 70992 1240 bp upstream
Tssr70993 transcription start site region 70993 1211 bp upstream
Tssr70994 transcription start site region 70994 1196 bp upstream
Tssr70995 transcription start site region 70995 1163 bp upstream
Tssr70996 transcription start site region 70996 1137 bp upstream
Tssr70997 transcription start site region 70997 1071 bp upstream
Tssr70998 transcription start site region 70998 1051 bp upstream
Tssr70999 transcription start site region 70999 995 bp upstream
Tssr71000 transcription start site region 71000 584 bp upstream
Tssr71001 transcription start site region 71001 518 bp upstream
Tssr71002 transcription start site region 71002 499 bp upstream
Tssr71003 transcription start site region 71003 471 bp upstream
Tssr71004 transcription start site region 71004 453 bp upstream
Tssr71005 transcription start site region 71005 108 bp upstream
Tssr71006 transcription start site region 71006 75 bp upstream
Tssr71007 transcription start site region 71007 13 bp upstream
Tssr71008 transcription start site region 71008 82 bp downstream
Tssr71009 transcription start site region 71009 100 bp downstream
Tssr71010 transcription start site region 71010 244 bp downstream
Tssr71011 transcription start site region 71011 277 bp downstream
Tssr71012 transcription start site region 71012 313 bp downstream
Tssr71013 transcription start site region 71013 939 bp downstream
Tssr71014 transcription start site region 71014 1488 bp downstream
Tssr71015 transcription start site region 71015 1613 bp downstream
Tssr71016 transcription start site region 71016 1849 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory