rs31678913 SNP Detail

Summary

• ID
  rs31678913
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:58543534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAA CACATTTTTC AAACCAAGCA
  Y
  TGCCCCAAGG AGACCTTTAG GGACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss45058470	mCV22736678	ABI	CRAMUS_MOUSE	f	SNP	C	C	C		T
ss49403521	NES12780758	PERLEGEN	MM_PANEL2	f	SNP				C		C	T	C
ss149138114	ENSMUSSNP3713392	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs31678913					SNP	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49403521	NES12780758	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58543534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi280	CpG island 280	59 bp proximal
Gm15834	predicted gene 15834	771 bp upstream
Orc2	origin recognition complex, subunit 2	within coordinates
Rr396056	regulatory region 396056	573 bp upstream
Rr411446	regulatory region 411446	726 bp distal
Rr411447	regulatory region 411447	within coordinates
Rr411448	regulatory region 411448	587 bp proximal
Rr411449	regulatory region 411449	724 bp proximal
Rr411450	regulatory region 411450	793 bp proximal
Tssr6780	transcription start site region 6780	760 bp upstream
Tssr11783	transcription start site region 11783	544 bp downstream
Tssr11784	transcription start site region 11784	571 bp downstream