rs31678924 SNP Detail

Summary

• ID
  rs31678924
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:51631843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCAGCTG GGGTTCAGCC
  TGGTTGAGTT CAGTTTTGGA GGAAGACAAC CCCAAGGTCT TTGATGTTAT AAATGCTGAG
  GTATCATGCC CAGTCAAGCT TTCAGGAAAC ATACCAAGTT AGTCTTAATA GCTTCCTCCC
  CAAACACCAA AAATAAAAAC AGAGAGAGAA AGAAGGGGGA GCAGAAAGAT GACCAGAATA
  R
  CATCTGGGGT CGCTGTCAGC CCCGCTCAGA ACCCTTGTCT CTGTGTATCC TGTTCTGTGT
  GTCCTTGCCT CTGTGTGTAC TGCTTAGCTC CAGGGATATC TAAAGTCGGA GGCCACTAAG
  ACCTCAAGTC TACGAAGTAG TGATTCATAA AATTAAGAAA GAGAAACCAG TACTGACAAC
  ACTGTTAGGC AAAATTGTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45058979	mCV23215656	ABI	CRAMUS_MOUSE	f	SNP	G	A					A
ss47350169	NES11070511	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	A	A	A	A	G	A	A	G
ss149111860	ENSMUSSNP5690647	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A					A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31678924					SNP	G	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47350169	NES11070511	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:51631843 () rs orientation: forward

Symbol	Name	Function Class
Gm17767	predicted gene, 17767	within coordinates
Rr366896	regulatory region 366896	1314 bp upstream
Rr410724	regulatory region 410724	1122 bp proximal
Tssr6634	transcription start site region 6634	1309 bp upstream
Tssr6635	transcription start site region 6635	1486 bp upstream
Tssr6636	transcription start site region 6636	1564 bp upstream