rs31679410 SNP Detail

Summary

• ID
  rs31679410
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156266538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTT CTGACACCTC ACACAGATAA
  Y
  ATGCAGACAA AACACCAGGG CATAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss45058672	mCV23089508	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss145796597	ENSMUSSNP1759969	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320072190	CHEV_1_158369099	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs31679410					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156266538 () rs orientation: forward

Symbol	Name	Function Class
Rr13324	regulatory region 13324	1938 bp distal
Rr31351	regulatory region 31351	878 bp distal
Rr396421	regulatory region 396421	1353 bp downstream
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	727 bp upstream
Tssr14442	transcription start site region 14442	341 bp downstream