rs31679989 SNP Detail

Summary

• ID
  rs31679989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136515484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGACCCTC CTATCTAGTC TTTACTGTAT
  TCACTTAAAA AAAAAAAACC CATCTTAACA AACATGTGGC TAAAATCTAT ATGTGTGCAT
  AGATGTGGCC TTTGGATTTT TGATGACCGC GTGAGAGTGA TCGTAGGAGT GGGGGAATGC
  Y
  AGGTTTGAAC CTGCTGTTCC GTCCTGTTTG GATGACCAGT GTAGCGCTCC CCATTCCTAG
  GATGAAAGGA GAGCACTCCT AGAAGTTCAA TTGTGCTTCC ATATCTCTTG ACACTTCAAA
  AAACGGCCAA GGAGTGTGGA GAGGTGAGGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45058478	mCV24736709	ABI	CRAMUS_MOUSE	f	SNP		T					T		C
ss49503635	NES12859840	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	C	T	T		C	T	C	T		T
ss319996216	CHEV_1_138484323	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31679989					SNP	T	T	T	T	T	T	T	C	C	T	T	C	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49503635	NES12859840	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136515484 () rs orientation: forward

Symbol	Name	Function Class
4933409D19Rik	RIKEN cDNA 4933409D19 gene	within coordinates
Gm57131	predicted gene, 57131	within coordinates
Rr419475	regulatory region 419475	59 bp proximal
Rr419476	regulatory region 419476	940 bp proximal