rs31680102 SNP Detail

Summary

• ID
  rs31680102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189406281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTC CAGGCAATCT GACAGCCACA
  Y
  ACAGACATGC CTCCAAGCAA AACAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45058576	mCV27560393	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss146488439	ENSMUSSNP486894	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320191100	CHEV_1_191497963	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31680102					SNP	C	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189406281 () rs orientation: forward

Symbol	Name	Function Class
Cenpf	centromere protein F	Intron
Gm70084	predicted gene, 70084	within coordinates
Rr425819	regulatory region 425819	1353 bp proximal
Rr425820	regulatory region 425820	1437 bp proximal
Rr425821	regulatory region 425821	1609 bp proximal