rs31682130 SNP Detail

Summary

• ID
  rs31682130
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98947981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGGACCACA CGCATGCAGT ACCCACATAA GCCAGAAGAG
  GGCGTTGGAT CCTCTGGAAC TTGCGTTACA AAGGGTTGTG AGCCACCGGT GTGGGAGCTG
  K
  GGATAGAACC CGCGACCTCC AGAAGAGGCC AGTTCTCTTC ACTGCCAAGC CATCTCCTCA
  GCAGCACCCT GCCCCCCTCC TATCTTATTT TGTAAACTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss39315227	mCV25200934	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	T	G
ss148463882	ENSMUSSNP4052418	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G		G		G
ss325079708	CHEV_15_98880531	CHEVERUD	SCREENING_POP	f	SNP						T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs31682130					SNP	G	T	G	T	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98947981 () rs orientation: forward

Symbol	Name	Function Class
D15Jcs28	DNA segment, Chr 15, John C. Schimenti 28	1981 bp distal
Gm41399	predicted gene, 41399	within coordinates
Rr305848	regulatory region 305848	within coordinates
Rr315589	regulatory region 315589	within coordinates