rs31682167 SNP Detail

Summary

• ID
  rs31682167
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101166545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCCTCA GCACCCTCTG
  CCTCAGCACC CTCTGCCTCA GCACCCTCTG CCTCAGTGTT CCTGTGTGAC CTGTCTTTTC
  AACTAGAAAG TCTAGAACTG TACAGACCCC AGAGTTGGAG GTGGAAAGGG ACACTAGGTC
  CTGGAGCCTC CTCTGTGGGC TTTTTTGACC AGATGAGAAC GTAAGGGCCT CCTCCAGCTA
  Y
  CCCTGGTCAT TCAGGTGCTT CAGGTTTGTG ACCTTTGCTG AGACCCTGGA TGCTGCAGCA
  AACAGACATC TGCTTTAGCA GAGGGACAGC TTGTCTCTGT GCATCCGCTG GTAGGATCCT
  CCACTCTGTC CAATTAGCTT GCGGCTGCTG CTGGGTTCTG AGTGTTCTCT TACAAAATGA
  CAAGGTTAGG GGGCTGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
ss39315323	mCV22753597	ABI	CRAMUS_MOUSE	f	SNP		T	T		C		C
ss63630911	NES17041002	PERLEGEN	MM_PANEL2	f	SNP	T		T	T		T		C	C
ss148484373	ENSMUSSNP5050739	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ
rs31682167					SNP	T	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63630911	NES17041002	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101166545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7777	CpG island 7777	1416 bp distal
Gm63176	predicted gene, 63176	1996 bp upstream
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Rr370021	regulatory region 370021	704 bp downstream
Rr510000	regulatory region 510000	1808 bp distal
Rr510001	regulatory region 510001	1949 bp distal
Rr510002	regulatory region 510002	92 bp distal
Rr510003	regulatory region 510003	1456 bp distal
Tssr133214	transcription start site region 133214	1805 bp downstream
Tssr133215	transcription start site region 133215	1552 bp downstream
Tssr133216	transcription start site region 133216	1521 bp downstream
Tssr133217	transcription start site region 133217	1418 bp downstream
Tssr133218	transcription start site region 133218	790 bp downstream
Tssr133219	transcription start site region 133219	768 bp downstream
Tssr133220	transcription start site region 133220	673 bp downstream
Tssr133221	transcription start site region 133221	613 bp downstream
Tssr133222	transcription start site region 133222	723 bp upstream
Tssr133223	transcription start site region 133223	1412 bp upstream
Tssr133224	transcription start site region 133224	1455 bp upstream
Tssr133225	transcription start site region 133225	1466 bp upstream
Tssr133226	transcription start site region 133226	1487 bp upstream
Tssr133227	transcription start site region 133227	1495 bp upstream
Tssr133228	transcription start site region 133228	1513 bp upstream
Tssr133229	transcription start site region 133229	1524 bp upstream
Tssr133230	transcription start site region 133230	1602 bp upstream
Tssr133231	transcription start site region 133231	1634 bp upstream
Tssr133232	transcription start site region 133232	1653 bp upstream
Tssr133233	transcription start site region 133233	1681 bp upstream
Tssr133234	transcription start site region 133234	1699 bp upstream
Tssr133235	transcription start site region 133235	1732 bp upstream
Tssr133236	transcription start site region 133236	1781 bp upstream
Tssr133237	transcription start site region 133237	1803 bp upstream
Tssr133238	transcription start site region 133238	1836 bp upstream
Tssr133239	transcription start site region 133239	1878 bp upstream
Tssr133240	transcription start site region 133240	1970 bp upstream
Tssr133241	transcription start site region 133241	1987 bp upstream
Tssr133242	transcription start site region 133242	1995 bp upstream
Tssr136545	transcription start site region 136545	1635 bp downstream
Tssr136546	transcription start site region 136546	1757 bp downstream
Tssr136547	transcription start site region 136547	1833 bp downstream
Tssr136548	transcription start site region 136548	1843 bp downstream
Tssr136549	transcription start site region 136549	1877 bp downstream
Tssr136550	transcription start site region 136550	1983 bp downstream