rs31683156 SNP Detail

Summary

• ID
  rs31683156
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99768500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAAGAGACC CCCACCTCAA ACCGGTCAGA AAGGCAGGAA
  TGAAACCAAG ACGGTCCTCT GACCTTGCCC TGTGCCCTGT AGCCTGTGTG CATACACATT
  Y
  ACATACATGA ACACACACAG TTCAAAAGAC AGACAAAAGT AGTCAAAAGG CAGAGAAAGT
  AATATTCTTT CCTATTGACC CAGGTAGAAA GTCAGTTCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47078436	NES11627335	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C		T	T	C	T	T	C	T
ss145524265	ENSMUSSNP2991510	ENSEMBL	ENSEMBL_Sanger	f	SNP	T						C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31683156					SNP	T	T	T	T	C	C	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47078436	NES11627335	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99768500 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19477	CpG island 19477	1559 bp proximal
Pold3	polymerase (DNA-directed), delta 3, accessory subunit	within coordinates
Rr652064	regulatory region 652064	1340 bp proximal
Tssr73730	transcription start site region 73730	1230 bp downstream
Tssr73731	transcription start site region 73731	1753 bp downstream