rs31683162 SNP Detail

Summary

• ID
  rs31683162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:99768787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTATACAGG CAACTCAGAT TGGACTCATT TGTGTGTGTG
  TTGGACCTGG AAGGACTGGG AAATGAGTGT GAGTGGGGTG CATGATGTGA AAATTCCAAA
  Y
  AAACAATAAA AAGATGATGC TGAAAATAAT AAATAAAAAC AAAGTGAAAG AAAAATTCCA
  ATATTATTAA AATTAGCAGT CAAATGAACT TACTGTTTGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47078442	NES11627339	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31683162					SNP	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47078442	NES11627339	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:99768787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19477	CpG island 19477	1272 bp proximal
Pold3	polymerase (DNA-directed), delta 3, accessory subunit	within coordinates
Rr400466	regulatory region 400466	1850 bp upstream
Rr652064	regulatory region 652064	1053 bp proximal
Rr652065	regulatory region 652065	1876 bp proximal
Tssr73730	transcription start site region 73730	943 bp downstream
Tssr73731	transcription start site region 73731	1466 bp downstream
Tssr73732	transcription start site region 73732	1852 bp downstream
Tssr73733	transcription start site region 73733	1866 bp downstream
Tssr73734	transcription start site region 73734	1932 bp downstream