rs31684316 SNP Detail

Summary

• ID
  rs31684316
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:39630426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTTTATA CACTTGAATG
  GACTTCGGTT GGTCCTTTAA TCTTTCAGTT TGTAGCAGGA GGTAATATCT ACCCATGCAT
  CTCACAGGAA GTAGGGTTGA AAAGAAGACT ACTAACTTTG AGAATTATTC AGAAAACAGG
  AGAGGCATAC ATACGTTTTG CATCATCAGT AAGTTGCAAC AAAAGTACCA GTTATCTTTA
  Y
  CCCTCTTTAT TTGTGTCATG TGATATCCAG TGCACAGGGC AATGGAGTTT TAGGCAAGGG
  GGTGTCAACT TGTATCAGTG GTAGCTATAC AAGCTTGCAA AAGCTGCCTG TTAATTTTTC
  AAAGATTTTG TTAGTTACTA ATCATCCTCG TTATTACAAA TAATTTACAA ACTTACAGCT
  AAACATTTCA ACAGCAATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49265072	NES12699596	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31684316					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49265072	NES12699596	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:39630426 () rs orientation: forward

Symbol	Name	Function Class
Nr3c1	nuclear receptor subfamily 3, group C, member 1	within coordinates
Tssr150833	transcription start site region 150833	629 bp downstream
Tssr150834	transcription start site region 150834	610 bp downstream
Tssr153089	transcription start site region 153089	773 bp upstream