rs31684412 SNP Detail

Summary

• ID
  rs31684412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82222499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CAACATTGCC TTGGAGTCAA ATCTCAGGAC CCACTCGAAT CTGCTCTTAG
  Y
  AGCTTTATAT GCTGAACTGT GGAAGATAAC AGATGTTATG TATCCCACCG           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	MOLF/EiJ	NZW/LacJ
ss48077798	NES12072934	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	MOLF/EiJ	NZW/LacJ
rs31684412					SNP	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48077798	NES12072934	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82222499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7419	CpG island 7419	353 bp proximal
Naga	N-acetyl galactosaminidase, alpha	within coordinates
Pheta2	PH domain containing endocytic trafficking adaptor 2	649 bp upstream
Rr506479	regulatory region 506479	474 bp proximal
Rr506480	regulatory region 506480	672 bp proximal
Rr506481	regulatory region 506481	806 bp proximal
Tssr4669	transcription start site region 4669	566 bp downstream
Tssr135542	transcription start site region 135542	1278 bp upstream
Tssr135543	transcription start site region 135543	472 bp downstream
Tssr135544	transcription start site region 135544	503 bp downstream
Tssr135545	transcription start site region 135545	559 bp downstream