rs31684954 SNP Detail

Summary

• ID
  rs31684954
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:39628815 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGCTTGA CTGAAATCAC
  TTGTAGCATC TTTCCATTTA GGTTGTATAG AAGAATGGCT TCTTTTCATA CTCATGTCTC
  ATCCTTAATA TGAAAACACA CATGAGGGAA AACACAAGAG CCTGGAGAGC TCAGCTGGTA
  GCCAGAGAAA TGTCTGGAGG AACCTTGGCT CTGTGTTCAC CACTGCTGGC CACCAGTGCT
  W
  AGTCTTTCAC CAAGACTACA GAACTTGGAC TTATTGGGAT GAATTGATGT GACTTTTGTT
  GGAAAAGATC TTATTCACGG AAAGACTCTA CATAGCAATT CCAGGCCCAC CTGTGCTACT
  GGTTATCATG TGAGTTCTCT TACAAAGAGA CACTTCTTTA AAATTTATTT TCCTCCAGCT
  ATGATCATTT TTCATGGCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss49265080	NES12699587	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31684954					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49265080	NES12699587	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:39628815 () rs orientation: forward

Symbol	Name	Function Class
Nr3c1	nuclear receptor subfamily 3, group C, member 1	within coordinates
Tssr150833	transcription start site region 150833	971 bp upstream
Tssr150834	transcription start site region 150834	987 bp upstream
Tssr153089	transcription start site region 153089	823 bp downstream